I am using in game references. You say because of Four Swords that WW cannot be the end (which makes NO SENSE WHATSOEVER). I mention LOZ. Ganon does not recognize Link in it. Thus how is OOT the beginning? Because collective fan thinking it is. OOT is as much a remake or cannonizing of the basic legend as anything else. It is the perfect mold of previous ideas and stands apart from them. All the 3D games since OOT fit perfectly in a timeline with that game. The 2D games do not, and you only try and force the square pegs into the round holes because you want them to. Nintendo said there are two timelines, they never said what they were. My theory could be just as apt as any thusly. However, my theory allows the games in both timelines to exist with cohesion and little confusion. By mixing the 2D and 3D games you run into a series of contradictions that cannot be explained and are simply ignored.
In WW the king says "No it will not be Hyrule, it will be your land!" which is the game saying that this is not Hyrule but something new. You want it to be Hyrule so it can accomdate your theories, but the game implies it isn't. Does it spell it out? No. But Nintendo seemed to imply pretty heavily that it will not be Hyrule and the only people who suggest they find a new land that seems eerily similar to the one in OOT are fans trying to squeeze it in. The line is open to interpretation, but the reading the creators intended for the text is that there would not be another Hyrule. Fans want it to be so it makes sense for themselves.
That's not the case.