I dunno, I actually rewatched KOTCS after this and I suddenly had a greater appreciation for KOTCS.
Mutt and Indy's relationship felt more real and better developed, with the two generational different characters learning from one another and growing in their relationship more organically, constrasted with the undeveloped Helena relationship where she is condescending and talks down to Indy for most of the film. We get more character development with Mutt then we do with Helena, which seems to rely on PWB and her comedic timing to try and make seem likable when the script does her no favors.
Marion has a real part and isn't just a last five minutes cameo.
The scope and scale of the movie felt more like the OG trilogy then DOD does. The CGI looks better.
It has more classic Indy elements then DOD does. More tomb raiding/exploring, and more action. Indy is also a better character who is much smarter and the movie doesn't constantly have him act like a sad sack who wants to die.
Yes, we have goofy crap like surviving a nuclear explosion by hiding in a refrigerator, and Cate Blanchett is a cartoon character (but the movie deserves props for having a female lead villain when most movies were afraid to do that... Marvel I am looking at you), but were they any worse then some of the nonsense in DOD?
Other problems with DOD:
Helena knocks Indy out, robbing him of his agency, and robbing the audience of a potentially thrilling sequence (getting a mortally wounded Indy back before the time fisher closes), but her reasons make no sense. Would Indy being left behind really change the timeline anymore then the watch or that the bad guys shot up a bunch of Romans from the plane before it crashed? She even said history got mucked up, but why would Jones being left behind there change things any worse?
Indy has the dial at the end, so what is to stop him from going back? He never made the decision to stay in the present because Helena robbed him of that agency by punching him in the face.