I wonder if the Company's goal is to bring all of the central heroes together to be killed off in the explosion (sans Claire (since Mama Petrelli appears to want her alive) and Nathan, since they feel they can use him to run the country). The reason being may be that this older group of super powers might feel their place is threatened by this younger group of upstarts who most likely could overtake them. After all, we know that Linderman has powers, Mama Petrelli has powers (though we don’t know what they are) Eric Roberts might have some special abilities, and George Takei might as well. If they all do, they are all older than any of the “main” heroes we’ve been following. It seems like a dumb theory, I know… but not totally improbable. The key is Peter. They need to eliminate him (and I somehow feel Mama wouldn’t have a problem with this) because he is the most powerful of all the heroes and he can’t be persuaded to the “dark side,” so to speak. Nathan, ironically, has more power WITHOUT his special abilities and has some skeletons in his closet, therefore he is “the one [they] need.” Sylar is insignificant (although I’m sure he would disagree). If he is the one who blows up New York, then great, if not someone else will… just as long as Peter dies (along with most of the other heroes he’s come into contact with) and they can blame it on some super-powered being.